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- S4.E1 ∙ A Creeping Threat! The Mysterious Visitor
- S4.E2 ∙ Farewell, Duel Academia! The Path Judai Chooses
- S4.E3 ∙ The Truth Behind Darkness! Judai VS Fubuki
- S4.E4 ∙ Fusing Souls! Neos VS F-G-D
- S4.E5 ∙ Shall We Duel? Invitation to a Pair Duel
- S4.E6 ∙ Judai VS Asuka! Face-Down Card of Hidden Emotions
- S4.E7 ∙ Challenge from Psycho Shocker
- S4.E8 ∙ The Inherited Cyber Dark Dragon
- S4.E9 ∙ Aim for it Manjoume! Path to a Pro Duelist!
- S4.E10 ∙ Armed Dragon VS Dragoon D End
- S4.E11 ∙ Gratitude Duel! Chronos vs. The Original Dropout Boy
- S4.E12 ∙ Opening of Graduation Duel! Neos vs Black Flame Dragon of Horus
- S4.E13 ∙ Price of Decision! O'Brien Flame of Darkness
- S4.E14 ∙ Saiou, Again! Activate 'Decisive Power of Absolute Destiny'
- S4.E15 ∙ End of Destiny! Magma Neos VS Dark Ruler
- S4.E16 ∙ Duel Academia Crisis! The Gem Beasts Blocking the Way
- S4.E17 ∙ Invasion of Darkness! The Stolen Memories
- S4.E18 ∙ Activate, Clear World! Ferocious Negative Effect
- S4.E19 ∙ Battle Royale! Judai VS Johan VS Fujiwara
- S4.E20 ∙ Rainbow Neos, Protector of Bonds VS Clear Vicious Knight
- S4.E21 ∙ Combo of Terror! Zero and Infinity
- S4.E22 ∙ Final Hope! Yuki Judai
- S4.E23 ∙ Good-Bye Judai! Tearful Graduation Ceremony
- S4.E24 ∙ The True Graduation Duel! Judai VS Legendary Duelist
