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- S4.E1 ∙ Beyond the Known Universe
- S4.E2 ∙ The Moons of Thalos 3
- S4.E3 ∙ The Weird World of Wyrm
- S4.E4 ∙ The Outlaw Armaggon
- S4.E5 ∙ Riddle of the Ancient Aeons
- S4.E6 ∙ Journey to the Center of Mikey's Mind
- S4.E7 ∙ The Arena of Carnage
- S4.E8 ∙ The War for Dimension X
- S4.E9 ∙ The Cosmic Ocean
- S4.E10 ∙ Trans-Dimensional Turtles
- S4.E11 ∙ Revenge of the Triceratons
- S4.E12 ∙ The Evil of Dregg
- S4.E13 ∙ The Ever-Burning Fire
- S4.E14 ∙ Earth's Last Stand
- S4.E15 ∙ City at War
- S4.E16 ∙ Broken Foot
- S4.E17 ∙ The Insecta Trifecta
- S4.E18 ∙ Mutant Gangland
- S4.E19 ∙ Bat in the Belfry
- S4.E20 ∙ The Super Shredder
- S4.E21 ∙ Darkest Plight
- S4.E22 ∙ The Power Inside Her
- S4.E23 ∙ Tokka vs. The World
- S4.E24 ∙ The Tale of Tiger Claw
- S4.E25 ∙ Requiem
- S4.E26 ∙ Owari
