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• S3.E1 ∙ Beneath These Streets
• S3.E2 ∙ Turtles on Trial
• S3.E3 ∙ Attack of the 50-Foot Irma
• S3.E4 ∙ The Maltese Hamster
• S3.E5 ∙ Sky Turtles
• S3.E6 ∙ The Old Switcheroo
• S3.E7 ∙ Burne's Blues
• S3.E8 ∙ The Fifth Turtle
• S3.E9 ∙ Enter the Rat King
• S3.E10 ∙ Turtles at the Earth's Core
• S3.E11 ∙ April's Fool
• S3.E12 ∙ Attack of Big MACC
• S3.E13 ∙ The Ninja Sword of Nowhere
• S3.E14 ∙ 20,000 Leaks Under the City
• S3.E15 ∙ Take Me to Your Leader
• S3.E16 ∙ Four Musketurtles
• S3.E17 ∙ Turtles, Turtles Everywhere
• S3.E18 ∙ Cowabunga Shredhead
• S3.E19 ∙ Invasion of the Turtle Snatchers
• S3.E20 ∙ Camera Bugged
• S3.E21 ∙ Green with Jealousy
• S3.E22 ∙ Return of the Fly
• S3.E23 ∙ Casey Jones: Outlaw Hero
• S3.E24 ∙ Mutagen Monster
• S3.E25 ∙ Corporate Raiders from Dimension X
• S3.E26 ∙ Pizza by the Shred
• S3.E27 ∙ Super Bebop & Mighty Rocksteady
• S3.E28 ∙ Beware the Lotus
• S3.E29 ∙ Blast from the Past
• S3.E30 ∙ Leatherhead: Terror of the Swamp
• S3.E31 ∙ Michelangelo's Birthday
• S3.E32 ∙ Usagi Yojimbo
• S3.E33 ∙ Case of the Hot Kimono
• S3.E34 ∙ Usagi Come Home
• S3.E35 ∙ The Making of Metalhead
• S3.E36 ∙ Leatherhead Meets the Rat King
• S3.E37 ∙ The Turtle Terminator
• S3.E38 ∙ The Great Boldini
• S3.E39 ∙ The Missing Map
• S3.E40 ∙ The Gang's All Here
• S3.E41 ∙ The Grybyx
• S3.E42 ∙ Mister Ogg Goes to Town
• S3.E43 ∙ Shredderville
• S3.E44 ∙ Bye, Bye, Fly
• S3.E45 ∙ The Big Rip Off
• S3.E46 ∙ The Big Break In
• S3.E47 ∙ The Big Blow Out